目录
- perlReorder link libraries13年前
- pythonmove to a new python/ directory15年前
- ChangeLogRelease tabix-0.2.4 (r949)15年前
- Makefileupdated BGZF14年前
- NEWSRelease tabix-0.2.4 (r949)15年前
- README.mdAlso point to the new homes of Java/Perl/Python bindings etc5年前
- TabixReader.javafixed a bug found by Pierre Lindenbaum14年前
- bam_endian.hinitial source code. It is BUGGY!16年前
- bedidx.cfixed a bug: input BED not sorted15年前
- bgzf.cupdated BGZF14年前
- bgzf.hupdated BGZF14年前
- bgzip.cupdated BGZF14年前
- example.gtf.gz * improved C/Perl APIs16年前
- example.gtf.gz.tbirestructure get_intv() for BED support15年前
- index.cupdated BGZF14年前
- khash.hinitial source code. It is BUGGY!16年前
- knetfile.c * tabix-0.1.3-3 (r556)16年前
- knetfile.hinitial source code. It is BUGGY!16年前
- kseq.hrestructure get_intv() for BED support15年前
- ksort.hinitial source code. It is BUGGY!16年前
- kstring.cinitial source code. It is BUGGY!16年前
- kstring.hinitial source code. It is BUGGY!16年前
- main.c-C to output lines not overlapping BED12年前
- tabix.1Release tabix-0.2.4 (r949)15年前
- tabix.hBED support15年前
- tabix.pyRelease tabix-0.2.116年前
- tabix.texminor clarification to the format spec16年前
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The code in this repository is deprecated and we do not advise its use
This legacy repository contains early development on the tabix and bgzip commands, tabix language bindings, and various associated code. This repository is now archived and of historical interest only. Most of these items are now superseded by improved versions elsewhere:
The
tabixandbgzipcommands are at https://github.com/samtools/htslibThe Java implementation is included in https://github.com/samtools/htsjdk (see src/main/java/htsjdk/tribble/readers/TabixReader.java)
The Perl binding is superseded by https://github.com/Ensembl/Bio-DB-HTS (see in particular
Bio::DB::HTS::Tabix)The Python binding is at https://github.com/slowkow/pytabix
The tabix file format is described at https://github.com/samtools/hts-specs