目录
- .githubflatten unzip for test data2个月前
- 1.9narrower no-ipa-modref target2个月前
- 2.0multiallelic-split + --new-id-max-allele-len missing bugfix2个月前
- pgen_spec'this component' instead of 'fourth component', since it's number 3 instead of 4 in a list12个月前
- .gitattributesAdded GLM test vs R - single logistic example (#307)3个月前
- .gitignoreadd all R parameter permutations and modular code for running list of parameters/tests2个月前
- README.mdcopyedit12个月前
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What this updates: https://zzz.bwh.harvard.edu/plink/
Main methods paper: https://academic.oup.com/gigascience/article/4/1/s13742-015-0047-8/2707533
PLINK 1.9 and 2.0 user documentation: https://www.cog-genomics.org/plink/1.9/ , https://www.cog-genomics.org/plink/2.0/
Technical support forum: https://groups.google.com/g/plink2-users
The 1.9/ implementation can typically be used as a drop-in replacement for PLINK 1.07 that scales to much larger datasets. It’s technically still a beta version because there are a few rarely-used but possibly-worthwhile PLINK 1.07 commands that are still absent, but active feature development for it ended in 2016.
The 2.0/ implementation is designed to handle VCF files and dosage data, and is under active development. Most basic features other than non-concatenating merge are now in place. See its README.md for more details.