目录
- .githubadding issue template that directs people to our mailing list, refs #285544年前
- buildreplacing a LICENSE file that I forgot before, no redmine2年前
- confsInstalling updated hg.conf files from UCSC servers2个月前
- docsMaking small tweaks to the new trainings, like reducing the image width to 65% so it better fits on the screen due to the resolution, and staging various updates on our pages including the news archive announcing the release of our new tutorials page, refs #359565个月前
- javaMake java utils configurable between http and https, and https is the default. We are turning on redirect to https everywhere.2年前
- pythonPipes is deprecated in Python3. Using shlex instead. refs #356123个月前
- srcMerge branch 'master' of hgwdev.gi.ucsc.edu:/data/git/kent2个月前
- .gitignoreCGI loaders working11个月前
- LICENSEtrying to make the LICENSE file easier to read, after email discussion with IATC3年前
- READMEPreview2 week - bugs introduced now will need a build patch to fix2年前
- install-hooks.shadding pre-commit hook to help users find out that the file is too big before they commit, not after they push.4年前
- pre-commit-prevent-large-files.shadding pre-commit hook to help users find out that the file is too big before they commit, not after they push.4年前
目录README
CONTENTS AND COPYRIGHT
This directory contains the entire source tree for the UCSC Genome Browser Group’s suite of biological analysis and web display programs as well as some of Jim Kent’s own tools. All files are copyrighted, but license is hereby granted for personal, academic, and non-profit use. Please see the LICENSE file in the current directory for more details, the license differs by directory. If you want only the MIT-licensed parts of the code (libraries and command line tools, e.g. for use in package managers and pipelines), have a look at https://github.com/ucscGenomeBrowser/kent-core
Commercial users interested in the UCSC Genome Browser please see http://genome.ucsc.edu/license/. https://genome-store.ucsc.edu/ Commercial users interested in BLAT, gfServer, isPCR and related tools should contact http://www.kentinformatics.com/ for access
If you want to run a local installation of the UCSC Genome Browser (we call this a mirror, even when it includes only a small part of the data), you do not need the whole source tree. We provide statically compiled binary CGI-bin executables, the apache htdocs folder, binary MySQL databases and ancillary large data files in /gbdb via an Rsync download server. For install details see http://genome.ucsc.edu/admin/mirror.html
The pre-compiled user application binaries may function on your system without this build procedure. For example to obtain the linux.x86_64 binaries: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/ ./
Mac OSX binaries available via: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/macOSX.x86_64/ ./
If you are looking for only the MIT licensed, minimal part of the source code to build the command line tools, e.g. for pipelines and package managers, see this code repository: https://github.com/ucscGenomeBrowser/kent-core
Most source code users will only be interested in the kent/src/inc and kent/src/lib directories, which contain the interfaces and implementations to the library routines, and in a few specific applications. The applications are scattered in other directories. Many of them are web based. The UCSC Genome Browser in particular is mostly found in kent/src/hg/hgTracks.
The current version number is stored in src/hg/inc/versionInfo.h . The current version of a running genome browser is displayed in the html tag