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ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C dataSee wiki for details (https://github.com/tangerzhang/ALLHiC/wiki).
Please be aware that ALLHiC is no longer maintained. We recommend using two recently released algorithm packages developed by our team, which are reference-free and much faster:
AllHic是一款功能强大、自动化程度高、精确比对、可视化界面直观且可灵活定制的Hi-C数据可视化和分析工具,可以帮助更好地理解染色体的结构和功能。
ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
See wiki for details (https://github.com/tangerzhang/ALLHiC/wiki).
Note
Please be aware that ALLHiC is no longer maintained. We recommend using two recently released algorithm packages developed by our team, which are reference-free and much faster: