ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
See wiki for details (https://github.com/tangerzhang/ALLHiC/wiki).

Note

Please be aware that ALLHiC is no longer maintained. We recommend using two recently released algorithm packages developed by our team, which are reference-free and much faster:

• C-Phasing: C-Phasing GitHub Repository
• HapHiC: HapHiC GitHub Repository