目录
- StatEmbed Stat::Basic module for vardict2mut.pl (fix #50)8年前
- additionsUpdates for shells (in case of huge vars) for simple and somatic downstream scripts.6年前
- gitProject updated7年前
- .gitignoregitignored idea and macos files8年前
- LICENSEInitial commit11年前
- README.rstUpdate README.rst2年前
- checkCov.pl1. Remove dupdates on the fly with -t option. 2. Improved amplicon-awareness calling for softly clipped reads due to undesired BWA pairing with read itself. 3. Change amplicon-awarenees BED files are 8 columns that can also be viewed in IGV.11年前
- checkSNV.plModified scripts to use /usr/bin/env instead of hard coded paths to Perl/R binaries. Fixed typos and indentation in vardict.pl.12年前
- hg19_5k_150bpOL_seg.txt.gzBED file for hg1911年前
- joinLineChanged run permissions for perl scripts11年前
- minicheckCov.shInitial Commit12年前
- minicheckSNV.shInitial Commit12年前
- minivardict.shVarious updates11年前
- minivardict_ion.shImproved indel calling and somatic calling12年前
- my.bamAdd example bam and bed files to test installation10年前
- my.bam.baiAdd example bam and bed files to test installation10年前
- my.bedAdd example bam and bed files to test installation10年前
- pickLineChanged run permissions for perl scripts11年前
- runVarDict_BAM.shSome minor updates10年前
- sample2vardict.plSeveral indel improvements and bug fixes11年前
- splitBed.plsplitBed.pl permissions change to executable for group and user11年前
- splitBed2.plFix a bug for amplicon variant calling11年前
- testsomatic.RDisabled scientific notification in R script that changes values by default.6年前
- teststrandbias.RDisabled scientific notification in R script that changes values by default.6年前
- var2vcf_paired.plClarify the exact definition of PMEAN in the VCF header5年前
- var2vcf_valid.plClarify the exact definition of PMEAN in the VCF header5年前
- vardict.plVCF version moved to 4.2. as htsjdk libraries doesn't fully supported it at the moment and we don't have any 4.3. features in VCFs.5年前
- vardict2fm.plAdd vardict2sgz.pl and vardict2fm.pl9年前
- vardict2mut.plCLNSIG check logic moved to vcf2txt.pl7年前
- vardict2sgz.plAdd vardict2sgz.pl and vardict2fm.pl9年前
- vardict_sv.plVarDict for structural variants8年前
- vcf2txt.plvcf2txt.pl: address new Clinvar format for CLNSIG7年前
- waitVardict.plModified scripts to use /usr/bin/env instead of hard coded paths to Perl/R binaries. Fixed typos and indentation in vardict.pl.12年前
- vardictGenerated symlink vardict to point to vardict.pl12年前
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