This is a C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files.

Build

git submodule update --init --recursive
make CC=gcc -j 16
make test

See also guix.scm for the build environment we test with.

Dependencies

tabixpp has htslib as a dependency. If you want to build from the included submodule make sure that the following dependencies are available:

libcurl   libcurl - Library to transfer files with ftp, http, etc.
zlib      zlib - zlib compression library
liblzma   liblzma - General purpose data compression library

It is also possible to disable these inside htslib/config.h — generated after the first build.

Author: Erik Garrison erik.garrison@gmail.com