目录
- CAdding in MSA method to align between gaps.3年前
- docAdded install doc15年前
- externalToolsMake build system more flexible6年前
- .gitignoreAdded to gitignore to make eclipse play nice15年前
- .gitmodulesRemove spimap's binary recon functions.11年前
- .travis.ymlFix Travis on OS X8年前
- LICENSE.txtTest commit.12年前
- MakefileMake build system more flexible6年前
- README.mdMaking the readme nicer13年前
- __init__.pychanging copyright date from 2011 to 201213年前
- allTests.pyremoving the redundant run of the unit tests13年前
- bioio.pyStop explicitly passing stdout=sys.stdout, etc to subprocess.call9年前
- bioioTest.pyAdding fastq functions11年前
- cigarsTest.pychanging copyright date from 2011 to 201213年前
- include.mkFix memory errors and leaks, and enable memory leak detection in CI9年前
- kvdbTest.pyDisabling test of mysql database interface, as it's broken and we13年前
- misc.pychanging copyright date from 2011 to 201213年前
- nxnewick.pyMake adding implied root nodes optional to fix tests12年前
- nxnewickTest.pyMake adding implied root nodes optional to fix tests12年前
- nxtree.pyadd reroot function to nxtree, needed by new outgroup logic, and fix breadthfirsttraversal11年前
- nxtreeTest.pyadd reroot function to nxtree, needed by new outgroup logic, and fix breadthfirsttraversal11年前
- setup.pyFixing build vs. build_py bug; build command is never actually used12年前
- sonLib_daemonize.pyadd spanwDaemon() method to bioio.py, which calls new script14年前
- tree.pychanging copyright date from 2011 to 201213年前
- treeTest.pychanging copyright date from 2011 to 201213年前
- unitTest.pychanging copyright date from 2011 to 201213年前
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sonLib
sonLib is a compact C/Python library for sequence analysis in bioinformatics.
(c) 2006 - 2012 The Author(s). See
LICENSE.txtfor details.Author
Benedict Paten
Description
For basic data-structures in C it contains:
For bioinformatic data-structures it contains (or will contain):
For more details see the Full README in doc/README