seqchromloader

seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.

Plan to support dataset formats including:

• webdataset (done)
• tfrecord (x)

Training framework support:

• pytorch dataloader (done)
• pytorch-lightning datamodule (done)
• NVIDIA-DALI (x)

Installation

conda (suggested):

mamba install -c bioconda -c conda-forge seqchromloader

or

conda install -c bioconda -c conda-forge seqchromloader

pip

pip install seqchromloader

Usage

For detailed usage, please refer to documentation