RhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).
INPUT: genome sequences file in fasta format
OUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions
RhoTermPredict
RhoTermPredict algorithm in python language
RhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).
INPUT: genome sequences file in fasta format
OUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions