Updated documentation and added contributor Updated documentation of MCPcounter.estimate() to reflect support of ENSEMBL IDs as featuresType Added Florent Petitprez as a contributing author
Updated documentation and added contributor
Updated documentation of MCPcounter.estimate() to reflect support of ENSEMBL IDs as featuresType Added Florent Petitprez as a contributing author
This repository hosts the source code corresponding to the method described in our 2016 paper published in Genome Biology, Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
To install it, the easiest is to use the R package devtools and its function install_github. To do so, open an R session and enter
R
devtools
install_github
install.packages(c("devtools","curl")) ##Installs devtools and the MCPcounter dependancy 'curl' library(devtools) install_github("ebecht/MCPcounter",ref="master", subdir="Source")
Examples on how to run the algorithm on your data are shown in the documentation ?MCPcounter.estimate
?MCPcounter.estimate
用于从基因表达数据中估计免疫细胞和基质细胞丰度的R包
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MCPcounter
This repository hosts the source code corresponding to the method described in our 2016 paper published in Genome Biology, Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
To install it, the easiest is to use the
Rpackagedevtoolsand its functioninstall_github. To do so, open anRsession and enterExamples on how to run the algorithm on your data are shown in the documentation
?MCPcounter.estimate