NSCCN/orthanq：用于 HLA 分型预测、病毒谱系定量以及单倍型定量的 NGS 数据分析工具。

github-actions[bot]

chore(main): release 1.22.0 (#119)
:robot: I have created a release beep boop
#
1.22.0
(2026-05-07)
Features

activate varlociraptor bias detections & make homopolymer artifact
detection optional based on sample preparation
(#118)
(43b8fbe)
estimate alignment properties and use it for varlociraptor
prepocessing (#120)
(7decb41)
introduce new mode for fast processing of subclonal HLA typing
(#121)
(8c2ca24)
use –events flag to select for events instead of using just present
(#116)
(4f23966)


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README.md

Uncertainty aware haplotype quantification using a Bayesian model that is based on collecting evidences from Varlociraptor.

Orthanq is under active development.

Installation

Orthanq is available as a Bioconda package and can be installed via:

mamba install orthanq

HLA typing

Instructions to perform HLA typing is documented here: https://orthanq.github.io/docs/usage.html#hla-quantification

Virus lineage quantification

Instructions to perform virus lineage quantification is documented here: https://orthanq.github.io/docs/usage.html#virus-variant-quantification

Building for development and manual installation

The easiest way to build Orthanq is via its pixi workspace:

pixi install
pixi run cargo build
pixi run cargo run

关于

用于 HLA 分型预测、病毒谱系定量以及单倍型定量的 NGS 数据分析工具。

单倍型定量 HLA分型病毒谱系 NGS分析定量分析生物医药健康 rust

README.md

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