netresponse

Tools for functional network analysis (follow links for references):

• netresponse discover context-specific activation patterns in interaction networks

• Interaction Component Model ICMg to discover network modules. Can be supervised by functional information of the network.

For installation and usage, check the tutorial page.

Support

You are welcome to:

• submit suggestions and bug reports
• send a pull request
• ping antagomir at IRCnet or FreeNode

Authors

Maintainer: Leo Lahti

Contributors: Olli-Pekka Huovilainen, Antonio Gusmao, Juuso Parkkinen

Acknowledgements: This program is partially based on the AIVGA Agglomerative Independent Variable Group Analysis source code (v. 1.0) Copyright (C) 2001-2007 Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppa, Harri Valpola, and Paul Wagner.

Matlab implementation is also available but not supported.