This tool can be used to generate bootstrapped replicates of multiple sequence alignments.
The bootstrapped replicates are saved in relaxed PHYLIP format.
Release
MSABOOT 0.1.2
This release replaced the use of Biopython’s AlignIO.write function with a custom implementation.
Installation
Requires Python3 and pip3.
pip3 install .
Legal
Copyright Government of Canada 2018
Written by: Matthew Fogel, Public Health Agency of Canada
Licensed under the Apache License, Version 2.0 (the “License”); you may not use
this work except in compliance with the License. You may obtain a copy of the
License at:
Unless required by applicable law or agreed to in writing, software distributed
under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR
CONDITIONS OF ANY KIND, either express or implied. See the License for the
specific language governing permissions and limitations under the License.
Introduction
This tool can be used to generate bootstrapped replicates of multiple sequence alignments. The bootstrapped replicates are saved in relaxed PHYLIP format.
Release
MSABOOT 0.1.2
This release replaced the use of Biopython’s AlignIO.write function with a custom implementation.
Installation
Requires Python3 and pip3.
Legal
Copyright Government of Canada 2018
Written by: Matthew Fogel, Public Health Agency of Canada
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this work except in compliance with the License. You may obtain a copy of the License at:
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
Contact
Gary van Domselaar: gary.vandomselaar@canada.ca