metagene2: A package to produce metagene plots

This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

Bioconductor Package

metagene2 is an official package of Bioconductor. The current release and devel builds can be downloaded from their website:

Documentation

The official release and devel documentation of the package is available from Bioconductor. We also maintain a mirror of the devel documentation on the package website on github.io.

Authors

Eric Fournier, Charles Joly Beauparlant, Cedric Lippens, Arnaud Droit.

See Arnaud Droit Lab website.

Maintainer

Eric Fournier

License

This package and the underlying metagene code are distributed under the Artistic license 2.0. You are free to use and redistribute this software.

For more information on Artistic 2.0 License see this webpage

Bugs/Feature requests

If you have any bugs or feature requests, let us know.