Pierre Lindenbaum

Merge branch ‘dev’ of https://gitlab.univ-nantes.fr/pierre.lindenbaum/jvarkit into dev

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README.md

JVARKIT

Java utilities for Bioinformatics

Last commit

Documentation

Documentation is available at: https://jvarkit.readthedocs.io/

Download

A pre-compiled jar is available at https://uncloud.univ-nantes.fr/index.php/s/4sL77oWR2BFzSBH .

Compilation

Since 2023, most tools (but not all) are now packaged into one application jvarkit.jar. Tools that were executed like java -jar toolname.jar are now executed as java -jar jvarkit.jar toolname. The documentation is not always up to date on this point.

See the documentation at https://jvarkit.readthedocs.io/.