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htseq-clip

htseq-clip is a toolset for the analysis of eCLIP/iCLIP datasets. This python package can be used to generate files necessary for data analysis using the companion R/Bioconductor package DEWSeq.

URL: https://github.com/EMBL-Hentze-group/htseq-clip

Documentation: https://htseq-clip.readthedocs.io/en/latest/index.html

BugReports: https://github.com/EMBL-Hentze-group/htseq-clip/issues

This project is no longer actively maintained

We recommend using Shoji, an updated version of htseq-clip for CLIP data post-processing

Installation

pip install htseq-clip

Copyright (c) 2020 Sudeep Sahadevan, Marko Fritz, Nadia Ashraf and Thomas Schwarzl*

*Project lead: Thomas Schwarzl

Matthias Hentze and
Wolfgang Huber Labs,
EMBL, Heidelberg.

关于

用于 CLIP-seq 等实验中对区域或基因进行 reads 计数。

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