dependabot[bot]

chore(deps): bump softprops/action-gh-release from 1 to 2 (#13)
Bumps softprops/action-gh-release from 1 to 2.

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updated-dependencies:

dependency-name: softprops/action-gh-release
dependency-type: direct:production
update-type: version-update:semver-major
…

Signed-off-by: dependabot[bot] support@github.com
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

2年前51次提交

.githubchore(deps): bump softprops/action-gh-release from 1 to 2 (#13)2年前
includedoc(changelog): update2年前
libfix(HmnIllumina): missing files3年前
recipeschore(github): update3年前
srcfeat(hmnillumina): check arguments3年前
testsstyle(hmnillumina): super-linter, flake83年前
.clang-formatstyle(hmnillumina): super-linter, clang-format3年前
.gitignoretest(hmnillumina): relocate RunInfo & RunParameters files3年前
CHANGELOG.mddoc(changelog): update2年前
CPPLINT.cfgstyle(hmnillumina): super-linter, cpplint3年前
LICENSEfirst commit3年前
Makefilefix(HmnIllumina): missing files3年前
README.mddocs(hmnillumina): fix indent3年前

README.md

HmnIllumina

Parse InterOp folder from Illumina run to keep useful informations.

Install

conda install -n bioconda hmnillumina

Usage

HmnIllumina \
  -i/--input <FOLDER> \
  -o/--output <FILE>

The --input argument refers to an output directory produced by an Illumina sequencer named like 20200101_M0000_* for a Miseq run. The directory must contains:

a RunInfo.xml file.
a RunParameters.xml file.
an InterOp directory with at least these files: ErrorMetricsOut.bin, IndexMetricsOut.bin, QMetricsOut.bin, TileMetricsOut.bin.

The --output argument refers to a JSON file.
Undefined values are denoted by "" or "NA".

Test

pytest is required:

make test

Built with these main libraries

interop - InterOp library
rapidjson - Json library

关于

面向 Illumina 测序或芯片数据的读取、整理或分析工具。

Illumina 数据处理生物医药健康 c++c

README.md

6.1 MB

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