goseq

The goseq package provides a method to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

goseq can be found on Bioconductor (https://www.bioconductor.org/packages/goseq).

Installation

You can install the version of goseq which is on Bioconductor with these commands:

if (!require("BiocManager")) {
  install.packages("BiocManager")
}
BiocManager::install("goseq")

Alternatively, you can install the development version of goseq from GitHub with:

library("remotes")
remotes::install_github("federicomarini/goseq")