目录
- .atticchanging the code back to normal1年前
- .githubupdating pypi-publish GitHub Action11个月前
- docsnow version 1.3.2 which adds pyfastx instead of pysam for the random access to FASTA and FASTQ files, it seems to be passing the tests now30天前
- gaftoolsadding # to regex for sn tags10天前
- scriptsfixing --with-sequence option and adjusting the script for splitting and renaming chromosomes2年前
- testsupdated tests based on the new test files added10天前
- .gitignorecommitting after rebase1年前
- .pre-commit-config.yamlchecking if ruff excludes .attic folder1年前
- .readthedocs.yamlfixing error in ubuntu versioning1年前
- CHANGES.rstnow version 1.3.2 which adds pyfastx instead of pysam for the random access to FASTA and FASTQ files, it seems to be passing the tests now30天前
- LICENSEupdating license for 20263个月前
- MANIFEST.inadding manifest for PyPI upload1年前
- README.mdadding citation text1年前
- pyproject.tomladding pre-commit to dev package dependencies9个月前
- requirements.txtnow version 1.3.2 which adds pyfastx instead of pysam for the random access to FASTA and FASTQ files, it seems to be passing the tests now30天前
- setup.pycode formatted by black1年前
- tox.iniremoving py38 from local tox tests6个月前
邀请码
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gaftools
gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments. It provides various functionalities such as indexing, sorting, realignment, viewing and statistical analysis of rGFA-based GAF files.
Detailed documentation is available here.
The preprint is available here.
Citation
Pani, S., Dabbaghie, F., Marschall, T. & Söylev, A. gaftools: a toolkit for analyzing and manipulating pangenome alignments. (2024) doi:10.1101/2024.12.10.627813.