fcScan

fcScan is a Bioconductor package aiming at clustering genomic features based on a defined window size and combination of sites.

Dependencies

The below R packages are required for installation:

• stats
• plyr
• utils
• VariantAnnotation
• SummarizedExperiment
• rtracklayer
• GenomicRanges
• IRanges
• foreach
• doParallel
• parallel

Installation

1. Git clone the project directory git clone https://github.com/pkhoueiry/fcScan.git
2. From the terminal run R CMD build fcScan
3. Run R CMD check fcScan_1.7.4.tar.gz
4. Run R CMD BiocCheck fcScan_1.7.4.tar.gz
5. Install package by R CMD INSTALL fcScan_1.7.4.tar.gz
6. Start R and load library using library(fcScan)