eBCSgen

eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).

The tool is deployed online as a part of BioDivine Galaxy toolset.

For more information about the tool, see Wiki.

To get started with the usage of Galaxy Platform and eBCSgen, we recommend this tutorial.

Installation

Conda

Install eBCSgen from Bioconda with:

# install eBCSgen in a new virtual environment to avoid dependency clashes
conda create --name eBCSgen python=3.9
conda activate eBCSgen
conda install --channel bioconda --channel conda-forge eBCSgen

Docker

You can also use prebuild docker image.

Galaxy

eBCSgen is also available as a series of Galaxy tools available in the main toolshed.

Developer Documentation

Setup

Create your development environment using the provided script via conda to install all required dependencies.

Contributing

We appreciate contributions - feel free to open an issue on our repository, create your own fork, work on the problem and post a PR. Please adhere to the versioning.

Testing

All functionality is tested with the pytest framework.