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+ 疑修
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Adam Struck

Merge pull request #2 from chapmanb/master

Nested workflows, scatter, fixes for workflow output

9年前42次提交
  • cwl2wdlSupport scatter for tasks and sub-workflows9年前
  • testsadded sample cwl workflows from https://github.com/common-workflow-language/workflows10年前
  • .gitignoreupdated setup.py; renamed cwl2wdl/cwl2wdl.py to cwl2wdl/main.py10年前
  • README.mdUpdate README.md10年前
  • cwl2wdl_dev.pyupdated setup.py; renamed cwl2wdl/cwl2wdl.py to cwl2wdl/main.py10年前
  • requirements.txtupdated setup.py; renamed cwl2wdl/cwl2wdl.py to cwl2wdl/main.py10年前
  • setup.cfgadded parser classes and methods10年前
  • setup.pyupdated test cwl files10年前
README.md

cwl2wdl

Proof of concept converter from Common Workflow Language (CWL) to the Broad Institute’s Workflow Definition Language (WDL).

Usage

cwl2wdl <cwl_file>

OR

python cwl2wdl_dev.py <cwl_file>

Prints the WDL representation to stdout.

Resources

  • CWL (https://github.com/common-workflow-language/common-workflow-language)
  • WDL (https://github.com/broadinstitute/wdl)
  • wdl2cwl (https://github.com/common-workflow-language/wdl2cwl)
关于

将Common Workflow Language (CWL) 工作流转换为Workflow Description Language (WDL) 的工具

工作流转换格式互操作生物信息学工具泛化工具common workflow languagepython
README.md
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