convert_zero_one_based

Python CLI to convert between zero and one based coordinate systems

Installation

Install Anaconda

1. You can find an installer to Anaconda here for your distribution (macOS, Linux, windows).
2. Download the installer and follow the instructions.

Install from bioconda (easiest)

1. Add the bioconda channel

    conda config --add channels defaults
    conda config --add channels conda-forge
    conda config --add channels bioconda

2. Install

    conda install convert_zero_one_based
    

3. Verify the install

    convert_zero_one_based --help

Build from source

1. Clone this repo

    git clone https://github.com/griffithlab/convert_zero_one_based.git
    

2. Add conda-forge channel to build dependencies

    conda config --add channels conda-forge 
    

3. Use Anaconda to build the tool

    cd convert_zero_one_based
    conda build meta.yaml
    

4. Install the tool locally

    conda install convert_zero_one_based --use-local
    

5. Verify the install

    convert_zero_one_based --help