cfToolsData

The cfToolsData package supplies the data for the cfTools package (https://github.com/jasminezhoulab/cfTools). It contains two pre-trained deep neural network (DNN) models for the cfSort() function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector() function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve() function.

Installation

cfToolsData is an R package available via the Bioconductor repository for packages. You can install the release version by using the following commands in your R session:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}
BiocManager::install("cfToolsData")

Alternatively, you can install the development version from GitHub :

BiocManager::install("jasminezhoulab/cfToolsData")

Vignettes

See the detailed documentation for cfToolsData using the following commands in your R session

browseVignettes("cfToolsData")