CellScape

CellScape is a visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity.

Installation

To install CellScape, type the following commands in R:

# Bioc release version
if (!requireNamespace("BiocManager", quietly = TRUE)) {
  install.packages("BiocManager")
}
BiocManager::install("cellscape")

# GitHub devel version
BiocManager::install("ShixiangWang/cellscape")

Examples

Check the examples by:

?cellscape

Documentation

To view the documentation for CellScape, type the following command in R:

?cellscape

or:

browseVignettes("cellscape")

Citation

• Smith, Maia A., et al. “E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.” Nature Methods 14.6 (2017): 549-550.

Maintainer

• Shixiang Wang