restructure for packaging
This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)
minimap2 is used for mapping
pip install c4counter
please make sure you have minimap2 installed
conda install c4counter
conda will install minimap2 for you
基于转录组数据的免疫/基质细胞丰度估计工具，用于肿瘤微环境分析。
c4counter
This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)
Dependencies
minimap2 is used for mapping
Installation
pip
pip install c4counterplease make sure you have minimap2 installed
bioconda
conda install c4counterconda will install minimap2 for you