Replace HiCBricks with rhdf5 in getChrCGFromCools The vignette build was segfaulting in H5close() called from HiCBricks::Create_many_Bricks_from_mcool. Reading mcool files directly via rhdf5 (already a dependency) avoids the crash and removes HiCBricks as a dependency entirely. Verified output matches cgEx exactly (all.equal: TRUE).
Replace HiCBricks with rhdf5 in getChrCGFromCools
The vignette build was segfaulting in H5close() called from HiCBricks::Create_many_Bricks_from_mcool. Reading mcool files directly via rhdf5 (already a dependency) avoids the crash and removes HiCBricks as a dependency entirely.
Verified output matches cgEx exactly (all.equal: TRUE).
Bandwise Normalization and Batch Correction of Hi-C data.Authors: Kipper Fletez-Brant, Kasper Hansen
DNA 甲基化数据批次校正工具,用于减少技术偏差并提升可比性。
bnbc
Bandwise Normalization and Batch Correction of Hi-C data.
Authors: Kipper Fletez-Brant, Kasper Hansen
Software status