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cafletezbrant

Replace HiCBricks with rhdf5 in getChrCGFromCools

The vignette build was segfaulting in H5close() called from HiCBricks::Create_many_Bricks_from_mcool. Reading mcool files directly via rhdf5 (already a dependency) avoids the crash and removes HiCBricks as a dependency entirely.

Verified output matches cgEx exactly (all.equal: TRUE).

25天前160次提交
  • RReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • datadevel data2年前
  • instReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • manReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • srcversion bump and clean up8年前
  • testswhitespace, adding tests8年前
  • vignettesReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • .Rbuildignoreadded Rbuildignore8年前
  • .gitignoregitignore8年前
  • .travis.ymltravis8年前
  • DESCRIPTIONReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • NAMESPACEReplace HiCBricks with rhdf5 in getChrCGFromCools25天前
  • README.mdsmall fix8年前
README.md

bnbc

Bandwise Normalization and Batch Correction of Hi-C data.
Authors: Kipper Fletez-Brant, Kasper Hansen

Software status

Resource: Travis CI
Platforms: Linux
R CMD check Build status
Test coverage Coverage Status
关于

DNA 甲基化数据批次校正工具,用于减少技术偏差并提升可比性。

DNA甲基化批次校正数据标准化表观组学质量控制生物医药健康rc++
README.md
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