This tool can filter a seattle seq file.
A given bed file will only select variants inside this regions.
Filtering on specific fields is also possible.
Tool - MergeGenes
This tool can merge gene counts from the filter step into 1 combined matrix. Genes that are not there will be filled with 0.
Tool - MultiFilter
This tool can filter a seattle seq file.
A given bed file will only select variants inside this regions.
Filtering on specific fields is also possible.
SeattleSeqKit is part of BIOPET tool suite that is developed at LUMC by the SASC team.
Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a
dedicate data analysis task or added as part of a pipeline, for example the SASC team’s biowdl pipelines.
SeattleSeqKit
Tool - Filter
This tool can filter a seattle seq file. A given bed file will only select variants inside this regions. Filtering on specific fields is also possible.
Tool - MergeGenes
This tool can merge gene counts from the filter step into 1 combined matrix. Genes that are not there will be filled with 0.
Tool - MultiFilter
This tool can filter a seattle seq file. A given bed file will only select variants inside this regions. Filtering on specific fields is also possible.
Documentation
For documentation and manuals visit our github.io page.
About
SeattleSeqKit is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team’s biowdl pipelines.
All tools in the BIOPET tool suite are Free/Libre and Open Source Software.
Contact
For any question related to SeattleSeqKit, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.