Daniel McDonald

Utf8 regression (#1000)

BUG: unable to parse non-trivial UTF-8 characters

BUG: use .asstr per h5py recommendations (‘https://docs.h5py.org/en/latest/strings.html#reading-strings')

asstr does not handle an empty dataset

MAINT: in1d was deprecated in numpy switch to isin

DOC: changelog mention

macos-13 no longer supported

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README.md

The Biological Observation Matrix (BIOM) format

The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing counts of observations (e.g., OTUs, KO categories, lipid types) in one or more biological samples (e.g., microbiome samples, genomes, metagenomes).

Further details can be found at http://biom-format.org.

Installation

The easiest way to install the latest version of BIOM-Format is through conda-forge:

$ conda install -c conda-forge biom-format

Alternatively, you can install the latest version through PyPI:

$ pip install biom-format

Getting help

To get help with biom, please open an issue on the Github tracker.

关于

用于存储和操作生物观测矩阵数据的软件库

生物医药健康 python cython 生物信息学数据格式微生物组学数据分析

README.md

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