Corrections for bioc submission.

commit 3e95b0b2ba1aa55dd1286e30e022b264fb37b3bc Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:46:06 2022 +0100

Correct indentation. Remove donttest in examples.

commit 37db9081defab93aa407a8fb0220617796017379 Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:27:18 2022 +0100

Ignore doc and Meta.

commit 8cb2ef266467a3b514adf927a931d0af1ade9dfc Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:27:07 2022 +0100

First changelog.

commit 608247edaf5a50af932164a19b38b69b66e0cc10 Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:26:40 2022 +0100

Update with bioc install.

commit 8dea2633e0f4c92eefc7ec053a4c817b17b8e7fe Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:26:24 2022 +0100

Update doc.

commit e1804c948898352553c902675570d497a1087fb2 Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:25:55 2022 +0100

Add ORCID. Increase biodb version.

commit 0dba9495db58831aa5ce4dd954fcdea777b71cb9 Author: Pierrick Roger pk.roger@icloud.com Date: Tue Mar 22 12:25:34 2022 +0100

Use db extract. Add reference and session info.

biodbNci

An R package for accessing biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS API, based on R package/framework biodb.

Introduction

This package is an extension of biodb that implements a connector to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database.

Installation

Install the latest version of this package by running the following commands:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install('biodbNci')

Examples

To instantiate a connector to NCI CACTUS, a library for connecting to the National Cancer Institute (USA) CACTUS Database, run:

mybiodb <- boidb::newInst()
conn <- mybiodb$getFactory()$createConn('nci.cactus')
mybiodb$terminate()

Documentation

To get documentation on the implemented connector, run the following command in R:

?biodbNci::NciCactusConn

Citations

CADD Group Chemoinformatics Tools and User Services (CACTUS), National Cancer Institute, at https://cactus.nci.nih.gov/.