目录
- Rreverse the method name from gdsfn to gdsfile per GDSArray change2年前
- instAdd test functions5年前
- manreverse the method name from gdsfn to gdsfile per GDSArray change2年前
- testsfix building errors, replace open/close gdsn ops with acquireGDS per updated GDSArray2年前
- vignettesreverse the method name from gdsfn to gdsfile per GDSArray change2年前
- .Rbuildignoresome minor updates before submission7年前
- .gitignoresome minor updates before submission7年前
- DESCRIPTIONbump x.y.z version to odd y following creation of RELEASE_3_23 branch23天前
- NAMESPACEreverse the method name from gdsfn to gdsfile per GDSArray change2年前
- NEWSupdated NEWS file7年前
- README.mdupdate DESCRIPTION for submission7年前
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VariantExperiment
VariantExperiment is a Bioconductor package for saving data in VCF/GDS format into RangedSummarizedExperiment object. The high-throughput genetic/genomic data are saved in GDSArray objects. The annotation data for features/samples are saved in DelayedDataFrame format with mono-dimensional GDSArray in each column. The on-disk representation of both assay data and annotation data achieves on-disk reading and processing and saves memory space significantly. The interface of RangedSummarizedExperiment data format enables easy and common manipulations for high-throughput genetic/genomic data with common SummarizedExperiment metaphor in R and Bioconductor.