TissueEnrich: R package to carry out tissue-specific gene enrichment.

Citation

If you use TissueEnrich in published research, please cite:

Jain, A, Tuteja, G. (2018) TissueEnrich: Tissue-specific gene enrichment analysis. Bioinformatics, bty890. 10.1093/bioinformatics/bty890

Requirement

You need R version above 3.5 to run this application. Other dependencies are:

• dplyr (>= 0.7.3)
• ensurer (>= 1.1)
• ggplot2 (>= 2.2.1)
• tidyr (>=0.8.0)
• SummarizedExperiment (>= 1.6.5)
• GSEABase (>= 1.38.2)

How to install the R package

From Bioconductor

BiocManager::install("TissueEnrich")

From Github

• Install Dependencies
• install.packages(c("dplyr","ensurer","ggplot2","tidyr"))
• install.packages("BiocManager")
• BiocManager::install("SummarizedExperiment")
• BiocManager::install("GSEABase")
• Now install the devtools package
• install.packages("devtools")
• library(devtools)
• Run command install_github("Tuteja-Lab/TissueEnrich")

More about the package

• Check more details about the package in the vignette vignette("TissueEnrich")