The TimiRGeN package is made for researchers that wish to analyse time series microRNA-mRNA data sets after differential expression analysis.
TimiRGeN offers users the ability to integrate the multi-omic data,
perform functionally analysis, and to visualise this. Data can
easily be exported to cytoscape or pathvisio.
Please read the vignette for more information . Follow the instructions on the Pathvisio_GRN_guide found in the issues of the github repository for help in constructing networks and further development of GRNs.
Citation
citation: K Patel, S Chandrasegaran, I M Clark, C J Proctor, D A Young, D P Shanley, TimiRGeN: R/Bioconductor package for time series microRNA-mRNA integration and analysis, Bioinformatics, 2021;, btab377, https://doi.org/10.1093/bioinformatics/btab377
TimiRGeN R Package
author: “Krutik Patel, Bioinformatician at Newcastle University UK”
email: nkp68@newcastle.ac.uk
date: “09 04 2022”
The TimiRGeN package is made for researchers that wish to analyse time series microRNA-mRNA data sets after differential expression analysis. TimiRGeN offers users the ability to integrate the multi-omic data, perform functionally analysis, and to visualise this. Data can easily be exported to cytoscape or pathvisio.
Please read the vignette for more information . Follow the instructions on the Pathvisio_GRN_guide found in the issues of the github repository for help in constructing networks and further development of GRNs.
Citation
citation: K Patel, S Chandrasegaran, I M Clark, C J Proctor, D A Young, D P Shanley, TimiRGeN: R/Bioconductor package for time series microRNA-mRNA integration and analysis, Bioinformatics, 2021;, btab377, https://doi.org/10.1093/bioinformatics/btab377