TCGAutils

The TCGAutils package provides a suite of helper functions that aid in the management and cleaning of data from The Cancer Genome Atlas (TCGA).

Many of the functions contained herein work on raw and derived data objects from The Cancer Genome Atlas (TCGA), the RTCGAToolbox package and curatedTCGAData experiment data package.

Please make sure to download the latest version of RTCGAToolbox from Bioconductor.

Installation

if (!require("BiocManager"))
    install.packages("BiocManager")

library(BiocManager)

install("TCGAutils")

Cheatsheet

Please report minimally reproducible bugs at our github issue page