SpatialCPie

SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationship between clusters in order to guide the user during cluster identification, selection and further downstream applications.

Installation

Using devtools, execute the following from the R console:

devtools::install_github(
    "jbergenstrahle/SpatialCPie"
   ,build_opts=c("--no-resave-data", "--no-manual")
)

Bioconductor version

SpatialCPie is currently on the developmental version of Bioconductor (3.9): https://bioconductor.org/packages/devel/bioc/html/SpatialCPie.html

Usage

See the vignette:

vignette("SpatialCPie", package="SpatialCPie")