SpaceMarkers

An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.

Citation

If you use the SpaceMarkers software please cite:

Atul Deshpande, Melanie Loth, et al., Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces. Cell Systems, April 2023. https://doi.org/10.1016/j.cels.2023.03.004

Installation

You can install the latest Bioconductor release from SpaceMarkers using the code below.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpaceMarkers")

You can install the development version of SpaceMarkers directly from the Github source.

install.packages("remotes")
remotes::install_github("DeshpandeLab/SpaceMarkers", dependencies = TRUE, build_vignettes = TRUE)