R bioconductor package for computing semantic distance statistic for protein function predictors.
File list/functions:
computeIA.R :
This file contains the computeIA function, which creates a file containing all of the information accretion data for the input (organism, ontology). Both inputs are strings.
findRuMi.R :
This file contains the computeMI and computeRU functions, which calculate the remaining uncertainty and misinformation for given sets of true and predicted terms in a specified ontology.
gene2GO.R :
Contains additional helper functions to load GO data.
utilities.R :
Contains helper functions to initialize package environemnts.
SemDist
=======
R bioconductor package for computing semantic distance statistic for protein function predictors.
File list/functions:
computeIA.R :
This file contains the computeIA function, which creates a file containing all of the information accretion data for the input (organism, ontology). Both inputs are strings.
findRuMi.R :
This file contains the computeMI and computeRU functions, which calculate the remaining uncertainty and misinformation for given sets of true and predicted terms in a specified ontology.
gene2GO.R :
Contains additional helper functions to load GO data.
utilities.R :
Contains helper functions to initialize package environemnts.