sechm

Pierre-Luc Germain, 08.04.2021

D-HEST Institute for Neurosciences, ETH Zürich & Laboratory of Statistical Bioinformatics, University Zürich

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The sechm package is essentially a convenient wrapper around the ComplexHeatmap engine, facilitating the creation of heatmaps from SummarizedExperiment objects. This was formerly part of the SEtools package.

Install with:

BiocManager::install("plger/sechm")

Example usage:

sechm(SE, features=myGenes, top_annotation="Time", do.scale=TRUE, gaps_at="Condition",
       mark=c("Gm14288","Fos","Arc"))

See the package’s vignette for more information!