SCONE

Single-Cell Overview of Normalized Expression data

SCONE (Single-Cell Overview of Normalized Expression), a package for single-cell RNA-seq data quality control (QC) and normalization. This data-driven framework uses summaries of expression data to assess the efficacy of normalization workflows.

Install from Bioconductor

We recommend installation of the package via bioconductor.

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("scone")

Install from Github

Usually not recommended. To download the development version of the package, use

BiocManager::install("YosefLab/scone")

Install for R 3.3

You can download the latest release of SCONE for R 3.3 here. This is useful only for reproducing old results.