rmelting: R Interface to MELTING 5

Version : 1.13.3; License: GPL-2|GPL-3

Aravind, J.¹ and Krishna, G. K.²

1. Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi
2. Division of Crop Physiology, ICAR-Indian Agricultural Research Institute, New Delhi

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Description

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Installation

The package can be installed from Bioconductor as follows.

if (!"BiocManager" %in% rownames(installed.packages())) 
  install.packages("BiocManager")
BiocManager::install("rmelting")

The development version can be installed from github as follows.

if (!require('devtools')) install.packages('devtools')
devtools::install_github("aravind-j/rmelting")

Detailed tutorial

For a detailed tutorial on how to used this package type:

browseVignettes(package = 'rmelting')

What’s new

To know whats new in this version type:

news(package='rmelting')

Links

Bioconductor page

Github page

Documentation website

Bioconductor checks and metrics

Citing rmelting

To cite the methods in the package use:

citation("rmelting")

To cite the R package 'rmelting' in publications use:

  Aravind, J. and Krishna, G. K. (2023).  rmelting: R Interface to
  MELTING 5. R package version 1.13.3,
  https://aravind-j.github.io/rmelting/.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {rmelting: R Interface to MELTING 5},
    author = {J. Aravind and G. K. Krishna},
    year = {2023},
    note = {R package version 1.13.3},
    note = {https://aravind-j.github.io/rmelting/},
  }

This free and open-source software implements academic research by the
authors and co-workers. If you use it, please support the project by
citing the package.