RcisTarget is an R-package to identify transcription factor (TF) binding motifs over-represented on a gene list.
Availability:
The newest stable version of RcisTarget is available in Bioconductor.
The package also contains a tutorial(vignette) with information on how to run RcisTarget and how to interprete its results.
This Github repository is meant mostly for development. “Use at your own risk” :-). Developers are welcome to contribute.
RcisTarget
RcisTarget is an R-package to identify transcription factor (TF) binding motifs over-represented on a gene list.
Availability:
The newest stable version of RcisTarget is available in Bioconductor. The package also contains a tutorial (vignette) with information on how to run RcisTarget and how to interprete its results.
This Github repository is meant mostly for development. “Use at your own risk” :-). Developers are welcome to contribute.
Databases:
The databases required to run (R)cisTarget are available at https://resources.aertslab.org/cistarget/ (see the vignette for details). Alternative mirror: https://resources-mirror.aertslab.org/cistarget/.
A tutorial on how to create databases with different settings (e.g. new species) is available at https://github.com/aertslab/create_cisTarget_databases