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r3Cseq: an R package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data.
The r3Cseq package can be easily installed using the usual Bioconductor method:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("r3Cseq")
It can be also installed from the developer’s GitHub :
library(devtools) install_github("supatt-lab/r3Cseq")
The BioC3.9 in R3.6 will not anymore support the RangedData which is mainly used by r3Cseq in previous versions. The updated version of r3Cseq has been migrated to use the GRanges to support BioC3.9 in R3.6.
The documentation for the version of this package can be found in https://github.com/supatt/r3Cseq/blob/master/vignettes folder. How to use to package is also described on http://r3cseq.genereg.net/Site/index.html.
用于分析染色体构象捕获（3C）测序数据的R包
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r3Cseq
r3Cseq: an R package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data.
Installation from the BioC is recommended.
The r3Cseq package can be easily installed using the usual Bioconductor method:
It can be also installed from the developer’s GitHub :
Important update
The BioC3.9 in R3.6 will not anymore support the RangedData which is mainly used by r3Cseq in previous versions. The updated version of r3Cseq has been migrated to use the GRanges to support BioC3.9 in R3.6.
Documentation
The documentation for the version of this package can be found in https://github.com/supatt/r3Cseq/blob/master/vignettes folder. How to use to package is also described on http://r3cseq.genereg.net/Site/index.html.