psygenet2r

psygenet2r is an R package for query PsyGeNET database (www.psygenet.org) and perform co-morbidity studies within R framework.

What is this repository for?

This report is used for package distribution while we walk thought BioConductor publication process. psygenet2r is already in Biocondcutor-devel.

Package’ Status

• Version: 1.0.1
• Authors: Alba Gutierrez-Sacristan (GRIB-UPF), Carles Hernandez-Ferrer (CREAL)
• Maintainer: Alba Gutierrez-Sacristan (GRIB-UPF)

How to start

Installation

While BioCondutor finish updating the package, psygenet2r can be installed using devtools from this repository:

library(devtools)
install_github("aGutierrezSacristan/psygenet2r")

Querying PsyGeNET:

The following lines show two examples of how PsyGeNET can be queried using psygenet2r:

• Gene Query

library(psygenet2r)
qg <- psygenetGene(gene = 4852, 
    database = "ALL", 
    check = FALSE
)

• Disease Query

library(psygenet2r)
qd <- psygenetDisease(disease = "schizophrenia", 
    database = "ALL",
    evidenceIndex = c('>', 0.5) 
)