Cross omic genetic fingerprinting

This R package provides functionality to perform sample relationship verification using different omic data types. Such as, 450k DNA methylation data, RNA-sequencing or DNA based genotypes sequencing or array based imputed.

Checkout the vignettes directory for a few examples.

Installation

Install using the devtools-package

First install devtools. Next use:

library(devtools)
install_github("molepi/omicsPrint")

Sometimes install_github fails with CA cert error. Try running httr::set_config(httr::config( ssl_verifypeer = 0L)) before running install_github!

Install from source using git/R

Using git, e.g, use git clone and then build and install the package from source:

git clone git@git.lumc.nl:molepi/omicsPrint.git
R CMD build omicsPrint
R CMD INSTALL omicsPrint_x.y.z.tar.gz

Change _x.y.z. to the proper version you downloaded!

Vignettes

A few vignettes are provides showing applications of using omicsPrint to simulated and publicly available data:

• omicsPrint

• GSE39672

• GSE52980