What is this repository for?

• R client for accessing MyGene.info annotation and query services
• Package vignette

To install mygene:

• Install from Bioconductor by typing in your R console:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("mygene")

• Or download tarball from Bioconductor

Contact

• help@mygene.info

How to push changes to bioconductor

Ref: https://bioconductor.org/developers/how-to/git/push-to-github-bioc/

• Make sure you have the commit permission to git.bioconductor.org

  Setup at https://git.bioconductor.org/BiocCredentials/login/

• Make sure proper git remote upstream is added following the instruction above

  $ git remote -v
  origin  git@github.com:biothings/mygene.R.git (fetch)
  origin  git@github.com:biothings/mygene.R.git (push)
  upstream        git@git.bioconductor.org:packages/mygene.git (fetch)
  upstream        git@git.bioconductor.org:packages/mygene.git (push)

• Make changes and commit to origin/master

• Merge and push changes to git.bioconductor.org

  git fetch upstream
  git merge upstream/master

  Fix any merge conflicts and push the changes to upstream

  git push merge upstream master

Also follow this instruction for bugfix in a release branch: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/.

and this for bumping version after a bugfix: http://bioconductor.org/developers/how-to/version-numbering/.