目录
- Rfixing link error on windows by finding filename marraylm.Rd for MArrayLM-class7年前
- datamoved full app code to R folder for improved namespace management9年前
- instconsiderable additions to vignette including differential expression tests8年前
- manfix check errors2年前
- testsupdated vignette, added unit tests, passing BiocCheck with one warning on size of ivySE.rda8年前
- vignettestry again with correct path8年前
- DESCRIPTIONbump x.y.z version to odd y following creation of RELEASE_3_19 branch2年前
- NAMESPACEconsiderable additions to vignette including differential expression tests8年前
- README.mdUpdate README.md9年前
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ivygapSE
This package provides a SummarizedExperiment for Ivy-GAP metadata. See the ivyGlimpse app and an explanatory video.
The metadata and expression data are as distributed by Allen Institute for Brain Science as of 31 May 2017.
A brief vignette is available, and the ivyGlimpse() function will initiate a shiny app for exploring relationships between sub-block level image features quantified in ‘subBlockDetails’, survival time, and expression patterns. Essentially, one can use a scatterplot of a pair of image features to stratify the data.
ivyGlimpse will be accompanied by ivyTest, a tool for formally testing hypotheses relating image characteristics to expression patterns, and ivyBridge, which will emphasize interactive amalgamation of data and annotation related to glioblastoma.