目录
- RBugfix when matching chromosome sequences of different styles1年前
- instAdded gDNAtx() function2年前
- manAdded p.adj.method parameter to filterBAMtx()2年前
- testsAdded Unit tests2年前
- vignettesAdded gDNAtx() function2年前
- .gitignoreFirst more or less complete version3年前
- DESCRIPTIONBump version1年前
- NAMESPACEAdded p.adj.method parameter to filterBAMtx()2年前
- NEWSUpdated NEWS file and maintainer :'2年前
- README.mdUpdate README.md3年前
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gDNAx: Diagnostics for assessing genomic DNA contamination in RNA-seq data
The
gDNAxpackage calculates and plots different diagnostics related to gDNA contamination levels, such as strandedness and proportion of intergenic reads, intronic reads, splice compatible exonic reads and splice compatible junction reads. Moreover, the package is able to identify the strand library type in stranded RNA-seq data.Installation
You can install the
gDNAxpackage from this GitHub repo using the remotes package, as follows:Provided that you have installed first all its Bioconductor dependencies; see the
DESCRIPTIONfile. The vignette contains an example on how to use it.Questions, bug reports and issues
For bug reports and issues regarding this development version of gDNAx please use the GitHub issues tab at the top-left of this page.
Contributing
Contributions to the software codebase of gDNAx are welcome as long as contributors abide to the terms of the Bioconductor Contributor Code of Conduct. If you want to contribute to the development of GenomicScores please open an issue to start discussing your suggestion or, in case of a bugfix or a straightforward feature, directly a pull request.