BEDOPS v2.4.42: high-performance genomic feature operations

About

BEDOPS v2.4.42 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

The overview section of the BEDOPS v2.4.42 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applications and scripts.

Downloads

Linux	Source code
x86-64 (64-bit) binaries Installation instructions for Linux hosts	Source code (tar.gz) Source code (zip) Compilation instructions

Documentation

Complete documentation for BEDOPS v2.4.42 tools is available at: https://bedops.readthedocs.io/

Citation

If you use BEDOPS v2.4.42 in your research, please cite the following manuscript:

Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.
[BEDOPS: high-performance genomic feature operations
Bioinformatics (2012) 28 (14): 1919-1920.] (http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract)

Copyright

Copyright (C) 2011-2025 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds

Source code, documentation and media assets released under GNU Public License Version 2 (GPL v2).