目录
- docAdded PDF build for documentation8年前
- scriptsfeat: add BAM+GTF event table reporting to topology engine3个月前
- tapisfeat: add BAM+GTF event table reporting to topology engine3个月前
- testsfeat: add BAM+GTF event table reporting to topology engine3个月前
- LICENSEinitial10年前
- READMEREADME edited online with Bitbucket9年前
- README.mdinitial refactor chores3个月前
- contributors.txtUpdated contact information9年前
- pyproject.tomlfeat: add NetworkX topology engine and native TAPIS AS stats3个月前
- setup.pyinitial refactor chores3个月前
- uv.lockfeat: add NetworkX topology engine and native TAPIS AS stats3个月前
邀请码
News
Please check out our new Google newsgroup for TAPIS: https://groups.google.com/forum/?hl=en#!forum/tapis
July 13, 2016
Version 1.2.1 released!
GMAP version of 2015-07-23 is not compatible with TAPIS as a bug in their software does not provide strand information for all alignments. We recommend using a more recent version. Thank you to Lianfeng Gu from Haixia Institute of Science and Technology (HIST) for bringing this to our attention!
Summay
TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long reads with/without second generation reads, transcript clustering, novel and full-length splice isoform detection, and identification and analysis of polyadenylation (poly(A)) and alternative poly(A) (APA).
Install
python setup.py build
python setup.py install
Note:
To install to a local set of python libraries use –home=/PATH/TO/LOCAL/LIBRARY
Required Packages
Running
Align reads to reference genome using alignPacBio.py
Run analysis on aligned reads using run_tapis.py