目录
- RFixes an issue in plot_rainfall, where the input is not correctly sorted when the strands in the GRanges differ between mutations.3年前
- instFixed a mistake in the description of the get_known_signatures function.4年前
- manThe seed of the extract_signatures function can now be set by the user.4年前
- testsUpdated unit-test so it no longer fails incorrectly.4年前
- vignettesUpdated link to old manuscript.3年前
- .RbuildignoreMinor text fixes.5年前
- .gitignoreFixed some spelling errors using the spelling package.5年前
- DESCRIPTIONUpdated version number to match new bioconductor release.4年前
- LICENSEAdd license10年前
- NAMESPACEAdded first version of functions to look for regions of the genome with a different mutational pattern.4年前
- README.mdUpdate README.md3年前
邀请码
This project is no longer actively maintained. Please use the new version, which can be found here
MutationalPatterns
The MutationalPatterns R package provides a comprehensive set of flexible functions for easy finding and plotting of mutational patterns in mutation catalogues. Single nucleotide variants (SNVs), insertions and deletions (Indels), double base substitutions (DBSs) and larger multi base substitutions (MBSs) are supported.
Citation
Please give credit and cite the MutationalPatterns R Package when you use it for your data analysis. A paper for the newest version of the package is published in BMC Genomics. The original MutationalPatterns paper is published in Genome Medicine.
Dev version
To use the current development version of the package, you should first clone it from GitHub. Next, you can load it using:
A raw version of the new vignette can be found here
Bioconductor version
Please use Bioconductor to install the released version of this package. In Introduction to MutationalPatterns you can find comprehensive examples and explanations for the functions this package provides.